PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00137.1.g00250.1.sm.mkhc
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 122aa    MW: 13508.5 Da    PI: 10.5544
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00137.1.g00250.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.91.3e-281059251
                                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                    ri+n++ rqvtfskRrngi+KKA+EL +LCdaev ++ifsstg+lyeyss
  Zpz_sc00137.1.g00250.1.sm.mkhc 10 RIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLMIFSSTGRLYEYSS 59
                                    8***********************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.992161IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-38160IPR002100Transcription factor, MADS-box
CDDcd002656.78E-44277No hitNo description
SuperFamilySSF554554.06E-32279IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-27323IPR002100Transcription factor, MADS-box
PfamPF003192.3E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-273859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MGRGKTVIRR IDNSTSRQVT FSKRRNGIFK KAKELAILCD AEVGLMIFSS TGRLYEYSST  60
SMKSVIDRYG KAKEEQQVAA DPNSELKGGS KLETTTAQLT KESPFNFTMN QTKVLTAMAK  120
TG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_S1e-20177177Myocyte-specific enhancer factor 2B
1tqe_R1e-20177177Myocyte-specific enhancer factor 2B
1tqe_Q1e-20177177Myocyte-specific enhancer factor 2B
1tqe_P1e-20177177Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7281671e-101KJ728167.1 Zea mays clone pUT6437 MADS transcription factor (MADS39) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002452342.12e-56hypothetical protein SORBIDRAFT_04g024010
RefseqXP_004952891.16e-56PREDICTED: MADS-box transcription factor 27
SwissprotQ6EP492e-55MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A0D9W5U13e-63A0A0D9W5U1_9ORYZ; Uncharacterized protein
STRINGSb04g024010.17e-56(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.12e-44AGAMOUS-like 21